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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
ACC cis rs2273 1 rs10008757 chr4:76903036 NAAA chr4:76831809-76862166:- -0.53 -5.23 3.1E-6 Longevity
ACC cis rs1148186 1 rs1148180 chr10:28615756 MPP7 chr10:28339923-28591995:- -0.48 -5.06 5.58E-6 Pulmonary function decline
ACC cis rs1148186 1 rs1148181 chr10:28616051 MPP7 chr10:28339923-28591995:- -0.48 -5.06 5.58E-6 Pulmonary function decline
ACC cis rs1148186 1 rs1148182 chr10:28616419 MPP7 chr10:28339923-28591995:- 0.5 5.07 5.36E-6 Pulmonary function decline
ACC cis rs2239557 1 rs11628710 chr14:74649280 LIN52 chr14:74551656-74667117:+ 0.44 5.35 1.97E-6 Common traits (Other)
ACC cis rs6427356 1 rs1176555 chr1:157136541 MRPL24 chr1:156707094-156710923:- -0.54 -5.36 1.95E-6 Attention deficit hyperactivity disorder and conduct disorder
ACC cis rs1148186 1 rs1249347 chr10:28612860 MPP7 chr10:28339923-28591995:- -0.48 -5.05 5.74E-6 Pulmonary function decline
ACC cis rs1148186 1 rs1273097 chr10:28613512 MPP7 chr10:28339923-28591995:- -0.48 -5.05 5.74E-6 Pulmonary function decline
ACC cis rs7017914 1 rs13252719 chr8:71734569 XKR9 chr8:71581600-71648176:+ 0.67 6.83 9.19E-9 Bone mineral density
ACC cis rs7017914 1 rs13253842 chr8:71625503 XKR9 chr8:71581600-71648176:+ 0.72 6.83 9.23E-9 Bone mineral density
ACC cis rs4237643 1 rs17596617 chr11:43690717 HSD17B12 chr11:43702143-43878160:+ -0.42 -5.09 5.04E-6 Forced vital capacity
ACC cis rs17761864 1 rs17761723 chr17:2107090 SRR chr17:2207248-2228553:+ 0.58 5.22 3.19E-6 Esophageal cancer (squamous cell)
ACC cis rs2273 1 rs2242471 chr4:76878716 NAAA chr4:76831809-76862166:- 0.51 5.2 3.39E-6 Longevity
ACC cis rs2273 1 rs2242473 chr4:76878956 NAAA chr4:76831809-76862166:- 0.51 5.2 3.39E-6 Longevity
ACC cis rs2273 1 rs2242474 chr4:76878982 NAAA chr4:76831809-76862166:- 0.51 5.2 3.39E-6 Longevity